Use when you have aligned single-cell ATAC-seq data as BAM files or fragment files (TSV format with genomic coordinates) and need to prepare it for spectral embedding, clustering, and peak calling. This is the entry point after alignment but before any dimension reduction or statistical analysis.
no risky patterns detected
Type: Agent skill (SKILL.md) · Category: LLM & Model APIs · Source: https://github.com/HolobiomicsLab/asb-skill-collections/tree/HEAD/collections/ep
| Capabilities (fewer powerful permissions = higher) | 50/50 |
| Maintenance | 26/35 |
| Documentation | 15/15 |
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